High Performance Computing in Biology
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- University of Illinois at Urbana-Champaign
- http://www.hpcbio.illinois.edu
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16S-rDNA-dada2-pipeline 16S-rDNA-dada2-pipeline Public archive
**DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version
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eib-marker-design eib-marker-design Public
Workflow for designing KASP markers from resequencing data
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EMIRGE Public
Forked from csmiller/EMIRGE
EMIRGE reconstructs full length ribosomal genes from short read sequencing data.
Python 2
Repositories
- workflows-nextflow Public Forked from carpentries-incubator/workflows-nextflowHPCBio/workflows-nextflow’s past year of commit activity
Workflow management with Nextflow and nf-core
- old-configs Public Forked from nf-core/configsHPCBio/old-configs’s past year of commit activity
Config files used to define parameters specific to compute environments at different Institutions
- configs Public Forked from nf-core/configsHPCBio/configs’s past year of commit activity
Config files used to define parameters specific to compute environments at different Institutions
- loess-rs Public Forked from thisisamirv/loess-rsHPCBio/loess-rs’s past year of commit activity
LOESS (Locally Estimated Scatterplot Smoothing) implementation in Rust
- TADA PublicHPCBio/TADA’s past year of commit activity
TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
- dada2 Public Forked from benjjneb/dada2HPCBio/dada2’s past year of commit activity
Accurate sample inference from amplicon data with single nucleotide resolution
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