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John Huddleston huddlej

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  1. Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    Python 62 31

  2. Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution

    Jupyter Notebook 9 2

  3. Long-term forecasts for pathogen populations

    Python 1

  4. Pipeline components for real-time phylodynamic analysis

    Python 277 136

  5. Create reduced dimension embeddings for pathogen sequences

    Python 1

  6. Nextstrain build for SARS-CoV-2

    Python 1.4k 407