Open Microscopy Environment

says 👋

OME is a consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data. If you are working with bioimaging data like these:

then you may already be using something from OME! (You can find out more about these images on https://idr.openmicroscopy.org.)

Projects you may be interested in:

Find more ways to get started under https://www.openmicroscopy.org/explore!

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OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities,…

Java 217 104
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Pub…

Java 422 256
Examples of usage of the Bio-Formats API

Java 13 19
Examples playbooks for installing OMERO with Ansible and Docker

11 12
Gradle project containing insight java client for OMERO

Java 8 13
An OMERO.web app for creating Figures from images in OMERO

JavaScript 21 38

Repositories

Showing 10 of 347 repositories

upptime Public
📈 Uptime monitor and status page for OME, powered by @upptime

ome/upptime’s past year of commit activity

Markdown
1
MIT
2 4 1
Updated Jun 20, 2026
ome/omero-iviewer’s past year of commit activity

JavaScript
20 36 61 13
Updated Jun 19, 2026
status Public
Status dashboard for the OME project

ome/status’s past year of commit activity
ome/omero-documentation’s past year of commit activity

Python
24
BSD-2-Clause
52 22 3
Updated Jun 19, 2026
ome-zarr-py Public
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

ome/ome-zarr-py’s past year of commit activity
openmicroscopy Public
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …

ome/openmicroscopy’s past year of commit activity

Java
217
GPL-2.0
104 24 4
Updated Jun 17, 2026
napari-omero Public
Browse your OMERO database from within napari.

ome/napari-omero’s past year of commit activity

Python
40
GPL-2.0
16 15 5
Updated Jun 17, 2026
ngff Public
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

ome/ngff’s past year of commit activity
ome/omero-web-docker’s past year of commit activity

Makefile
7
BSD-2-Clause
22 14 7
Updated Jun 17, 2026
omero-web Public
Django-based OMERO.web client

ome/omero-web’s past year of commit activity