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COBRApy is a package for constraint-based modeling of metabolic networks.

Python 570 234
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

MATLAB 284 337
High-level, high-performance, constraint-based reconstruction and analysis in Julia

Julia 63 32
Mass Action Stoichiometric Simulation (MASS) Toolbox

Mathematica 13 8
MATLAB Development Tools

MATLAB 28 35
memote – the genome-scale metabolic model test suite

HTML 147 33

Showing 10 of 36 repositories

reconstructor Public
Open source tool for biochemical network reconstruction

opencobra/reconstructor’s past year of commit activity

Java
3
GPL-3.0
2 1 0
Updated Jun 16, 2026
cobratoolbox Public
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

opencobra/cobratoolbox’s past year of commit activity
COBRA.papers Public
Repository for scripts related to reproducing the results of an individual publication

opencobra/COBRA.papers’s past year of commit activity

MATLAB
10 16 1 0
Updated Jun 10, 2026
cobrapy Public
COBRApy is a package for constraint-based modeling of metabolic networks.

opencobra/cobrapy’s past year of commit activity
opencobra/escher’s past year of commit activity

JavaScript
2 2 2 0
Updated Jun 5, 2026
optlang Public
optlang - sympy based mathematical programming language

opencobra/optlang’s past year of commit activity

Python
270
Apache-2.0
53 31 1
Updated Jun 2, 2026
opencobra/cobrapy-website’s past year of commit activity

HTML
1
LGPL-3.0
7 0 1
Updated May 28, 2026
Medusa Public
Analysis of ensembles of metabolic network reconstructions

opencobra/Medusa’s past year of commit activity

Python
22
MIT
9 29 19
Updated May 20, 2026
swiglpk Public
Simple swig bindings for the GNU Linear Programming Kit

opencobra/swiglpk’s past year of commit activity

Python
30
GPL-3.0
10 2 2
Updated May 1, 2026
opencobra/COBRA.tutorials’s past year of commit activity

MATLAB
25 61 3 0
Updated Apr 27, 2026

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