UW-Madison LOCI

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Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)

MATLAB 28 18
Scripts and macros for LOCI scientific problems

Shell
ImageJ plugins for 3D visualization using the VisAD toolkit

Java 1
Miscellaneous ImageJ plugins

Java 2 1
Image.sc search service

Python

Showing 10 of 144 repositories

qupath-extension-qpsc Public
Java based extension for QuPath allowing control of a microscope through MicroManager

uw-loci/qupath-extension-qpsc’s past year of commit activity

Java
1
Apache-2.0 0
0 5
Updated Jun 19, 2026
uw-loci/EBEAM_dashboard’s past year of commit activity
uw-loci/tme-quant’s past year of commit activity

Python
1 1 26 1
Updated Jun 19, 2026
cellcast Public
A recast of cell segmentation models built on the Burn deep learning framework.

uw-loci/cellcast’s past year of commit activity

Rust
22
MIT
1 7 0
Updated Jun 19, 2026
uw-loci/Flamingo_Control’s past year of commit activity

Python
2
MIT
2 0 0
Updated Jun 19, 2026
uw-loci/knob-box’s past year of commit activity

C++
2 1 0 0
Updated Jun 19, 2026
uw-loci/qupath-catalog-mikenelson’s past year of commit activity

Python
3
0
0 0
Updated Jun 19, 2026
uw-loci/qupath-extension-cell-analysis-tools’s past year of commit activity

Java
4
Apache-2.0 0
1 0
Updated Jun 19, 2026
flamingo-stitcher Public
Standalone light-sheet tile stitching (CLI + GUI) for Flamingo T-SPIM data, extracted from py2flamingo.

uw-loci/flamingo-stitcher’s past year of commit activity

Python 0 GPL-3.0 0
0 0
Updated Jun 19, 2026
uw-loci/qupath-extension-dl-pixel-classifier’s past year of commit activity

Java 0 Apache-2.0 0
0 5
Updated Jun 18, 2026

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